SubtiBank SubtiBank
ydeL [2019-06-21 08:53:42]
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ydeL [2019-06-21 08:53:42]

similar to transcriptional regulator (MocR/ GabR family)
Locus
BSU05240
Isoelectric point
9.22
Molecular weight
53.36 kDa
Protein length
463 aa Sequence Blast
Gene length
1392 bp Sequence Blast
Function
unknown
Product
unknown
Essential
no
Synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      
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Categories containing this gene/protein

  • Information processing → Regulation of gene expression → Transcription factors and their control → Transcription factor/ other/ based on similarity

    • Gene

    Coordinates
    571,389 572,780

    The protein

    Protein family

  • MocR/ GabR family PubMed
  • class-I pyridoxal-phosphate-dependent aminotransferase family (according to Swiss-Prot)

    • Domains

  • N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.

    • Cofactors

  • PLP

    • Structure

  • 4MGR (GabR, 38% identity) PubMed

    • Localization

  • nucleoid (Homogeneous) PubMed

    • Biological materials

    Mutant

  • MGNA-C083 (ydeL::erm), available at the NBRP B. subtilis, Japan
  • BKE05240 (ydeL::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATTTGCGCGTTGTTCTCCT, downstream forward: _UP4_TGAGGGAGCTTTCAGTTTAG
  • BKK05240 (ydeL::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATTTGCGCGTTGTTCTCCT, downstream forward: _UP4_TGAGGGAGCTTTCAGTTTAG

    • References

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